AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/readme.rst
docs/usage.rst
src/abba_python/__init__.py
src/abba_python/abba_python.py
src/abba_python/run-abba-local-fiji.py
src/abba_python/run-abba.py
src/abba_python.egg-info/PKG-INFO
src/abba_python.egg-info/SOURCES.txt
src/abba_python.egg-info/dependency_links.txt
src/abba_python.egg-info/not-zip-safe
src/abba_python.egg-info/requires.txt
src/abba_python.egg-info/top_level.txt
src/abba_python/abba_private/AbbaAtlas.py
src/abba_python/abba_private/AbbaMap.py
src/abba_python/abba_private/AbbaOntology.py
src/abba_python/abba_private/DeepSliceProcessor.py
src/abba_python/abba_private/__init__.py
src/abba_python/deepslice/DeepSlice.py
src/abba_python/deepslice/__init__.py
src/abba_python/deepslice/utilities/QuickNII_functions.py
src/abba_python/deepslice/utilities/__init__.py
src/abba_python/deepslice/utilities/neuron_tools.py
src/abba_python/deepslice/utilities/plane_alignment.py
src/abba_python/deepslice/utilities/plane_alignment_rat.py
src/abba_python/deepslice/utilities/render_tools.py
src/abba_python/itk/__init__.py
src/abba_python/itk/abba_itk.py
src/abba_python/scijava_python_command/__init__.py
src/abba_python/scijava_python_command/command.py
src/abba_python/scijava_python_command/jupyter_ui.py
src/abba_python/scijava_python_command/magic.py
tests/__init__.py
tests/test_abba_python.py